PhageDive: the comprehensive strain database of prokaryotic viral diversity

@article{Rolland2025,
  Title = {PhageDive: the comprehensive strain database of prokaryotic viral diversity},
  Author = {Rolland, Clara and Wittmann, Johannes and Reimer, Lorenz C and Sardà Carbasse, Joaquim and Schober, Isabel and Dudek, Christian-Alexander and Ebeling, Christian and Koblitz, Julia and Bunk, Boyke and Overmann, Jörg},
  Editor = {},
  Journal = {Nucleic acids research},
  Year = {2025},
  Pages = {D819–D825},
  Volume = {53},
  Doi = {10.1093/nar/gkae878},
  Abstract = {Prokaryotic viruses represent the most diverse and abundant biological entities on Earth. So far, data on bacteriophages are not standardized, not readily available for comparative analyses and cannot be linked to the rapidly growing (meta)genomic data. We developed PhageDive (https://phagedive.dsmz.de), a comprehensive database for prokaryotic viruses gathering all existing data dispersed across multiple sources, like scientific publications, specialized databases or internal files of culture collections. PhageDive allows to link own research data to the existing information through an easy and central access, providing fields for various experimental data (host range, genomic data, etc.) and available metadata (e.g. geographical origin, isolation source). An important feature is the link between experimental data, the culture collection number and the repository of the corresponding physical bioresource. To date, PhageDive covers 1167 phages from three different world-renowned public collections (DSMZ, Félix d’Hérelle Reference Center for Bacterial Viruses and NCTC) and features an advanced search function using all data fields from the sections like taxonomy or morphology by controlled vocabulary and ontologies. PhageDive is fully interoperable with other resources including NCBI, the Viral Host Range database (VHRdb) of Institute Pasteur or the BacDive and MediaDive databases of DSMZ.},
}

TY  - JOUR
AU  - Rolland, Clara
AU  - Wittmann, Johannes
AU  - Reimer, Lorenz C
AU  - Sardà Carbasse, Joaquim
AU  - Schober, Isabel
AU  - Dudek, Christian-Alexander
AU  - Ebeling, Christian
AU  - Koblitz, Julia
AU  - Bunk, Boyke
AU  - Overmann, Jörg
TI  - PhageDive: the comprehensive strain database of prokaryotic viral diversity
T2  - Nucleic acids research
PY  - 2025
SP  - D819–D825
VL  - 53
DO  - 10.1093/nar/gkae878
AB  - Prokaryotic viruses represent the most diverse and abundant biological entities on Earth. So far, data on bacteriophages are not standardized, not readily available for comparative analyses and cannot be linked to the rapidly growing (meta)genomic data. We developed PhageDive (https://phagedive.dsmz.de), a comprehensive database for prokaryotic viruses gathering all existing data dispersed across multiple sources, like scientific publications, specialized databases or internal files of culture collections. PhageDive allows to link own research data to the existing information through an easy and central access, providing fields for various experimental data (host range, genomic data, etc.) and available metadata (e.g. geographical origin, isolation source). An important feature is the link between experimental data, the culture collection number and the repository of the corresponding physical bioresource. To date, PhageDive covers 1167 phages from three different world-renowned public collections (DSMZ, Félix d’Hérelle Reference Center for Bacterial Viruses and NCTC) and features an advanced search function using all data fields from the sections like taxonomy or morphology by controlled vocabulary and ontologies. PhageDive is fully interoperable with other resources including NCBI, the Viral Host Range database (VHRdb) of Institute Pasteur or the BacDive and MediaDive databases of DSMZ.
ER  -