Early identification of (emerging) infectious diseases caused by viruses and other pathogens is at the core of our activities. This allows us to rapidly characterize pathogens, study the etiology of diseases and provide methods for warning, prevention and control.

Advanced Sequencing Technologies and Bioinformatics for Plant Virus Discovery

We utilize state-of-the-art high-throughput sequencing (HTS) technologies combined with advanced bioinformatics pipelines to identify and characterize both known and novel plant viruses across a wide range of host species and environments. Our research places strong emphasis on understanding plant viromes to enhance diagnostic and surveillance capabilities. In addition to our scientific research work, these activities form the foundation of the HTS VirSeq Services provided by the Plant Virus Department—offering comprehensive assessments of the phytosanitary status of plant materials, via ensures rapid and accurate identification of viruses and other plant pathogens.

Rapid Identification and Diagnostics of Plant Viruses (and other pathogens) Using Oxford Nanopore Technologies Sequencing Platform

We have implemented portable Oxford Nanopore sequencing technology to enable rapid, real-time identification of plant viruses and other pathogens. This approach is specifically designed to streamline the entire workflow -from sample preparation to data generation and analysis- facilitating fast and efficient diagnostics.

Virus Diversity, Evolution and Epidemiology

Our group supports studies on virus diversity, evolution, and epidemiology, with a focus on emerging diseases, among them Cassava Brown Streak Disease and virus diseases associated to potyviruses in yam.

Full Genome Molecular Characterization of Plant Viruses in the DSMZ Plant Virus Department Collection

We contribute to the comprehensive molecular characterization of plant virus isolates within the DSMZ Plant Virus Collection, generating complete and accurately annotated genome sequences. This work complements broader departmental efforts to maintain the highest quality standards for our reference materials, supporting global research and diagnostic applications.